Scientific Officer (Project leader): Ms. Lisa Roberts (Research and Diagnostics)
Research Nurse: Sr. Gameda Benefeld
Genetic Counselling Intern: Mrs. Gillian Dusterwald
Part-time research Assistant: Dr. Nicole van der Merwe
PhD Student: Ms. Stacey Moses, Ms. Lisa Roberts
MSc (Genetic Counselling) Student: Dr. Rene Goliath, Ms. Kalinka Popel, Dr. Nicole van der Merwe,
MSc (Med) Student: Ms. Tshegofatso Pelego
The Retinal Research Group
L – R: Ms Lisa Roberts, Prof Raj Ramesar, Prof Jacquie Greenberg
The research into retinal degenerative disorders (RDDs) in Southern Africa involves the characterisation of the genetic basis of inherited blindness. Our research to date has led us to identify two novel genes – PRPF8 and CA4. We have also found the causative gene defects (mutations) in many South African families with RDDs, in many other genes. We have noticed in the 20 years since the research project was started, that the most prevalent genetic defects in the USA & the UK are present in South Africans at an almost insignificant incidence, indicating a novel gene pool for this group of disorders.
The identification of the specific mutation (and understanding of its biology) in every individual with an inherited RDD in SA, should provide the basis for establishing a solid foundation for the management of families with these genetic eye conditions and eventually, for possible future treatment options.
Early identification and management may be the key to delaying the onset of the serious blinding complications of some of these RDDs. Patients who know their status and understand their disease are well placed to receive training, while still sighted, for the years of visual impairment which remain ahead. Furthermore, patients who know their specific gene mutation have an established route to receive medical assistance, and are the most likely to benefit from timeous intervention. Knowing the exact mutation causing the blindness is an absolute prerequisite to participate in any gene-based therapy clinical trials.
We research the following RDDs interchangeably, moving our research focus every few years depending on international findings and technological advances: Retinitis Pigmentosa (dominant, recessive and X-linked forms), Macular Degeneration (including Stargardt disease), Leber Congenital Amaurosis and Usher syndrome. Our current research includes:
- Detection of mutations which cause RDDs, using Asper Biotech Microarrays
– Analysis of common mutations of the ABCA4 gene in South Africans (The “Quick 7” test)
– Next-generation sequencing towards the identification of novel RDD genes (International Collaboration)
– Understanding the molecular pathogenesis of mutations in the CA4 and PRPF8 genes
– Sequencing the ABCA4gene in indigenous Africans with Stargardt disease
– Investigating potential protective factors from age-related macular degeneration in indigenous Africans
- View the Retinal Degeneration Fact-sheet (2014)
- View the Retina Enews 2013 update
- View a list of publications and previous postgraduate students on the RDD research project
TO PARTICIPATE IN THE RESEARCH PROGRAMME
Written informed consent has to be obtained from all individuals before any research can be undertaken. To enquire about participating in the research programme, please contact Prof. Jacquie Greenberg or Retina South Africa. Please note the forms below that need to accompany all samples that are sent to the UCT laboratory.
There is no guarantee that by participating in the research programme, a family’s genetic mutation(s) will be identified. We do, however, endeavour to translate any diagnostic results arising from the research to participants (see point C below).
Research testing costs were historically covered by the research programme, funded by Retina SA, and undertaken at UCT. Genetic counselling and testing costs will no longer be covered by the research programme. Individuals can be seen for referral and counselling via the state services or as private referrals at their own cost, and the genetic test results will only be issued in the diagnostic setting outlined below. NO research results will be reported on. Genetic counselling and diagnostic testing costs will not be covered by the UCT research programme from 2013. Costs are to be borne by the individual concerned and must be discussed up front. Arrangements must be made for payment of the testing costs before the blood is sent to the laboratory, in accordance with Retina SA’s protocols. Testing may also be arranged through other laboratories at the request of the counsellor and/or patient. However, it needs to be noted that other laboratories may need extra time to prepare for the necessary testing.
Three types of diagnostic testing are available:
a) Asper Microarray chips: Mutation screening can be performed by Asper Ophthalmics, in Estonia (Europe), as part of a diagnostic screening process. This takes approximately 3 months as all meaningful Asper results are verified at UCT prior to result delivery. For information about this testing option, please contact Retina South Africa.
b) “Quick 7” testing: Our previous research, undertaken using the ABCA4 microarray chip from Asper Ophthalmics (above) revealed that, although there are >600 mutations in ABCA4, there are seven common mutations in South African individuals of Afrikaner descent, who suffer from Stargardt disease. We have established that about 5% of individuals in this demographic group are carriers of these mutations. We have thus developed a test to screen for these 7 mutations. The Quick 7 test takes about 6 weeks and is only offered to Stargardts patients of Afrikaner ancestry. Approximately 40% of these patients are molecularly diagnosed using this test, which is less effective in other populations or for other RDDs. For information about this testing option, please contact Retina South Africa. “Quick 7” testing is also available directly via the National Health Laboratory Service (NHLS).
c) Diagnostic testing arising from the research programme (testing for a known familial mutation): Once a genetic mutation has been identified through the research, and is confirmed, that family can be offered diagnostic testing for their specific mutation, at a cost. Given that the exact mutation is known, this is a much simpler process and consequently, the cost is considerably less than when mutation screening has to be performed, as in (a) and (b) above.
The diagnostic testing, and then the delivery of genetic results to individuals, is according to a very strict protocol, as follows:
- If contactable, all individuals who gave blood for research (or in the case of minors, the guardian) are sent a letter that the research found something meaningful for the family and if they would like to have a diagnostic genetic test, it is now available. Family members who have not participated in the research programme will not be contacted (as there will be no contact details available). Passing on the available information becomes the responsibility of the family members who did participate in the research. An individual may contact UCT to see if results are available but no research results will be released in the form of a written report.
- If they would like to have more information about the research or request a diagnostic genetic test (affected, at-risk, or carrier testing), an appointment is made to see a genetic counsellor at UCT/Wits/Groote Schuur Hospital as part of the routine state genetic services or they can be seen in private sector, at their own cost. The genetic test results will only be issued in the diagnostic setting, as outlined above.
- A new blood sample will be required from all individuals for diagnostic genetic testing. The relevant testing should be requested through UCT/NHLS/private laboratory. Genetic testing can be undertaken at UCT by arrangement, via Retina South Africa and takes about 6 weeks.
- An appointment is made for post-test genetic counselling, and the results will then be delivered to the individual, in person. Individuals are requested to provide permission for their results to be released to their managing clinical team. A copy of the DNA report can then be sent to the clinician; either by the genetic counsellor or by Professor Greenberg.